A framework for analyzing single-cell genomics data, in which geometrical properties are harnessed to obtain insights on cellular diversity, including precise clustering, clear visualizations, and ...

genomepy is designed to provide a simple and straightforward way to download and use genomic data. This includes (1) searching available data, (2) showing the available metadata, (3) automatically ...

转录组数据分析中，老师会碰到这样的问题： （1）这么多差异表达基因中，哪些基因参与了特定的功能，我如何寻找与预期功能有关的基因？ （2）我的测序物种比较新，数据库中信息比较缺乏，难以通过已知数据寻找目标功能基因。 这个时候，如果一个个去 ...

To evaluate the result generated by the ZSDP approach against standard sequence alignments, we compared the genome annotation files with RNA-seq results using Cufflinks v2.2.1 (Trapnell et al., 2012).

Here, we describe MetaErg, a standalone and fully automated metagenome and metaproteome annotation pipeline. Annotation of metagenomes is challenging. First, metagenomes contain sequence data of many ...

gfam is now archived and has been superseded by ConSAT. If you are new to gfam, please consider using ConSAT instead. The original documentation of gfam follows from here for historical purposes.

The molecular basis of morphological and physiological adaptations in snakes is largely unknown. Here, we study these phenotypes using the genome of the Burmese python (Python molurus bivittatus), a ...